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Dataset - def process_Binding_DB - extra space on "BindingDB Target Chain Sequence" #13

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opened 2025-10-14 17:38:17 -06:00 by navan · 0 comments
navan commented 2025-10-14 17:38:17 -06:00
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Originally created by @emanskaia on 8/22/2023

There is a double space instead of space in 'BindingDB Target Chain Sequence' between words "Chain" and "Sequence" that is giving an error with def in lines 262, 277 that give an error with run def process_BindingDB from Dataset
In the current BindingDB data file there is a single space

ffc98c0ed3/DeepPurpose/dataset.py (L262C29-L262C31)

ffc98c0ed3/DeepPurpose/dataset.py (L277C8-L277C8)

*Originally created by @emanskaia on 8/22/2023* There is a double space instead of space in 'BindingDB Target Chain Sequence' between words "Chain" and "Sequence" that is giving an error with def in lines 262, 277 that give an error with run def process_BindingDB from Dataset In the current BindingDB data file there is a single space https://github.com/kexinhuang12345/DeepPurpose/blob/ffc98c0ed317c3fa6be6f0213a17ef5ffce1b303/DeepPurpose/dataset.py#L262C29-L262C31 https://github.com/kexinhuang12345/DeepPurpose/blob/ffc98c0ed317c3fa6be6f0213a17ef5ffce1b303/DeepPurpose/dataset.py#L277C8-L277C8
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Reference: github/DeepPurpose#13
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