ModuleNotFoundError: No module named 'descriptastorus' #3

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opened 2025-10-14 17:37:45 -06:00 by navan · 0 comments

navan commented

2025-10-14 17:37:45 -06:00

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Originally created by @reni8911 on 7/3/2024

I installed the environment through environment.yml, and after successful installation, I ran Drug Properties Prediction with an error message as follows:

Traceback (most recent call last):
File "/mnt/sdb1/yinxiaoru/AIDD/project/ADMET/project/DeepPurpose-master/DeepPurpose/utils.py", line 15, in
from descriptastorus.descriptors import rdDescriptors, rdNormalizedDescriptors
ModuleNotFoundError: No module named 'descriptastorus'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "run_admet.py", line 4, in
from DeepPurpose import CompoundPred as models
File "/mnt/sdb1/yinxiaoru/AIDD/project/ADMET/project/DeepPurpose-master/DeepPurpose/CompoundPred.py", line 24, in
from DeepPurpose.utils import
File "/mnt/sdb1/yinxiaoru/AIDD/project/ADMET/project/DeepPurpose-master/DeepPurpose/utils.py", line 17, in
raise ImportError("Please install pip install git+https://github.com/bp-kelley/descriptastorus and pip install pandas-flavor")
ImportError: Please install pip install git+https://github.com/bp-kelley/descriptastorus and pip install pandas-flavor

Prompt for installing descriptastrorus and pandas flavor. An error occurred while installing descriptastrorus, with the following error message:

pip install git+https://github.com/bp-kelley/descriptastorus

Looking in indexes: http://pypi.douban.com/simple/, https://pypi.ngc.nvidia.com
Collecting git+https://github.com/bp-kelley/descriptastorus
Cloning https://github.com/bp-kelley/descriptastorus to /mnt/sdb1/yinxiaoru/.temp_dir/pip-req-build-q1ez9ilq
Running command git clone --filter=blob:none --quiet https://github.com/bp-kelley/descriptastorus /mnt/sdb1/yinxiaoru/.temp_dir/pip-req-build-q1ez9ilq
fatal: unable to access 'https://github.com/bp-kelley/descriptastorus/': Empty reply from server
warning: Clone succeeded, but checkout failed.
You can inspect what was checked out with 'git status'
and retry the checkout with 'git checkout -f HEAD'

error: subprocess-exited-with-error

× git clone --filter=blob:none --quiet https://github.com/bp-kelley/descriptastorus /mnt/sdb1/yinxiaoru/.temp_dir/pip-req-build-q1ez9ilq did not run successfully.
│ exit code: 128
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× git clone --filter=blob:none --quiet https://github.com/bp-kelley/descriptastorus /mnt/sdb1/yinxiaoru/.temp_dir/pip-req-build-q1ez9ilq did not run successfully.
│ exit code: 128
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.

*Originally created by @reni8911 on 7/3/2024* **I installed the environment through environment.yml, and after successful installation, I ran Drug Properties Prediction with an error message as follows:** > Traceback (most recent call last): > File "/mnt/sdb1/yinxiaoru/AIDD/project/ADMET/project/DeepPurpose-master/DeepPurpose/utils.py", line 15, in <module> > from descriptastorus.descriptors import rdDescriptors, rdNormalizedDescriptors > ModuleNotFoundError: No module named 'descriptastorus' > > During handling of the above exception, another exception occurred: > > Traceback (most recent call last): > File "run_admet.py", line 4, in <module> > from DeepPurpose import CompoundPred as models > File "/mnt/sdb1/yinxiaoru/AIDD/project/ADMET/project/DeepPurpose-master/DeepPurpose/CompoundPred.py", line 24, in <module> > from DeepPurpose.utils import > File "/mnt/sdb1/yinxiaoru/AIDD/project/ADMET/project/DeepPurpose-master/DeepPurpose/utils.py", line 17, in <module> > raise ImportError("Please install pip install git+https://github.com/bp-kelley/descriptastorus and pip install pandas-flavor") > ImportError: Please install pip install git+https://github.com/bp-kelley/descriptastorus and pip install pandas-flavor **Prompt for installing descriptastrorus and pandas flavor. An error occurred while installing descriptastrorus, with the following error message:** `pip install git+https://github.com/bp-kelley/descriptastorus` > Looking in indexes: http://pypi.douban.com/simple/, https://pypi.ngc.nvidia.com > Collecting git+https://github.com/bp-kelley/descriptastorus > Cloning https://github.com/bp-kelley/descriptastorus to /mnt/sdb1/yinxiaoru/.temp_dir/pip-req-build-q1ez9ilq > Running command git clone --filter=blob:none --quiet https://github.com/bp-kelley/descriptastorus /mnt/sdb1/yinxiaoru/.temp_dir/pip-req-build-q1ez9ilq > fatal: unable to access 'https://github.com/bp-kelley/descriptastorus/': Empty reply from server > warning: Clone succeeded, but checkout failed. > You can inspect what was checked out with 'git status' > and retry the checkout with 'git checkout -f HEAD' > > error: subprocess-exited-with-error > > × git clone --filter=blob:none --quiet https://github.com/bp-kelley/descriptastorus /mnt/sdb1/yinxiaoru/.temp_dir/pip-req-build-q1ez9ilq did not run successfully. > │ exit code: 128 > ╰─> See above for output. > > note: This error originates from a subprocess, and is likely not a problem with pip. > error: subprocess-exited-with-error > > × git clone --filter=blob:none --quiet https://github.com/bp-kelley/descriptastorus /mnt/sdb1/yinxiaoru/.temp_dir/pip-req-build-q1ez9ilq did not run successfully. > │ exit code: 128 > ╰─> See above for output. > > note: This error originates from a subprocess, and is likely not a problem with pip.

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Reference: github/DeepPurpose#3

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