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HTTPError #5
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Reference: github/DeepPurpose#5
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Originally created by @Pratanukayet on 4/1/2024
Beginning to download dataset...
HTTPError Traceback (most recent call last)
Cell In[2], line 10
4 os.makedirs(SAVE_PATH)
7 # Load Data, an array of SMILES for drug, an array of Amino Acid Sequence for Target and an array of binding values/0-1 label.
8 # e.g. ['Cc1ccc(CNS(=O)(=O)c2ccc(s2)S(N)(=O)=O)cc1', ...], ['MSHHWGYGKHNGPEHWHKDFPIAKGERQSPVDIDTH...', ...], [0.46, 0.49, ...]
9 # In this example, BindingDB with Kd binding score is used.
---> 10 X_drug, X_target, y = process_BindingDB(download_BindingDB(SAVE_PATH),
11 y = 'Kd',
12 binary = False,
13 convert_to_log = True)
15 # Type in the encoding names for drug/protein.
16 drug_encoding, target_encoding = 'CNN', 'Transformer'
File ~\anaconda3\Lib\site-packages\DeepPurpose\dataset.py:174, in download_BindingDB(path)
171 os.makedirs(path)
173 url = 'https://www.bindingdb.org/bind/downloads/BindingDB_All_2021m5.tsv.zip'
--> 174 saved_path = wget.download(url, path)
176 print('Beginning to extract zip file...')
177 with ZipFile(saved_path, 'r') as zip:
File ~\anaconda3\Lib\site-packages\wget.py:526, in download(url, out, bar)
524 else:
525 binurl = url
--> 526 (tmpfile, headers) = ulib.urlretrieve(binurl, tmpfile, callback)
527 filename = detect_filename(url, out, headers)
528 if outdir:
File ~\anaconda3\Lib\urllib\request.py:241, in urlretrieve(url, filename, reporthook, data)
224 """
225 Retrieve a URL into a temporary location on disk.
226
(...)
237 data file as well as the resulting HTTPMessage object.
238 """
239 url_type, path = _splittype(url)
--> 241 with contextlib.closing(urlopen(url, data)) as fp:
242 headers = fp.info()
244 # Just return the local path and the "headers" for file://
245 # URLs. No sense in performing a copy unless requested.
File ~\anaconda3\Lib\urllib\request.py:216, in urlopen(url, data, timeout, cafile, capath, cadefault, context)
214 else:
215 opener = _opener
--> 216 return opener.open(url, data, timeout)
File ~\anaconda3\Lib\urllib\request.py:525, in OpenerDirector.open(self, fullurl, data, timeout)
523 for processor in self.process_response.get(protocol, []):
524 meth = getattr(processor, meth_name)
--> 525 response = meth(req, response)
527 return response
File ~\anaconda3\Lib\urllib\request.py:634, in HTTPErrorProcessor.http_response(self, request, response)
631 # According to RFC 2616, "2xx" code indicates that the client's
632 # request was successfully received, understood, and accepted.
633 if not (200 <= code < 300):
--> 634 response = self.parent.error(
635 'http', request, response, code, msg, hdrs)
637 return response
File ~\anaconda3\Lib\urllib\request.py:563, in OpenerDirector.error(self, proto, *args)
561 if http_err:
562 args = (dict, 'default', 'http_error_default') + orig_args
--> 563 return self._call_chain(*args)
File ~\anaconda3\Lib\urllib\request.py:496, in OpenerDirector._call_chain(self, chain, kind, meth_name, *args)
494 for handler in handlers:
495 func = getattr(handler, meth_name)
--> 496 result = func(*args)
497 if result is not None:
498 return result
File ~\anaconda3\Lib\urllib\request.py:643, in HTTPDefaultErrorHandler.http_error_default(self, req, fp, code, msg, hdrs)
642 def http_error_default(self, req, fp, code, msg, hdrs):
--> 643 raise HTTPError(req.full_url, code, msg, hdrs, fp)
HTTPError: HTTP Error 404: 404